chr8:143752235:T>C Detail (hg19)

Information

Genome

Assembly Position
hg19 chr8:143,752,235-143,752,235
hg38 chr8:142,670,817-142,670,817 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.191
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.010 stomach carcinoma We analyzed 3 SNPs in the PSCA gene (rs2294008, rs9297976 and rs12155758) which ... BeFree 24023815 Detail
0.010 Malignant neoplasm of stomach We analyzed 3 SNPs in the PSCA gene (rs2294008, rs9297976 and rs12155758) which ... BeFree 24023815 Detail
Annotation

Annotations

DescrptionSourceLinks
We analyzed 3 SNPs in the PSCA gene (rs2294008, rs9297976 and rs12155758) which were previously foun... DisGeNET Detail
We analyzed 3 SNPs in the PSCA gene (rs2294008, rs9297976 and rs12155758) which were previously foun... DisGeNET Detail
Gene
-
dbSNP
rs9297976 dbSNP
Genome
hg19
Position
chr8:143,752,235-143,752,235
Variant Type
snv
Reference Allele
T
Alternative Allele
C
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs9297976
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.1908
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
3198
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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